4A04 Transcription date Sep 07, 2011
title Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome
authors K.El Omari, J.De Mesmaeker, D.Karia, H.Ginn, S.Bhattacharya, E.J.
compound source
Molecule: T-Box Transcription Factor Tbx1
Chain: A, B
Fragment: Tbox Domain, Residues 109-297
Synonym: Tbx1, T-Box Protein 1, Testis-Specific T-Box Prote
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a

Molecule: Dna
Chain: D, E

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.2065 R_Free 0.2269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.420 92.740 101.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.58 Å
Primary referenceStructure of the DNA-bound T-box domain of human TBX1, a transcription factor associated with the DiGeorge syndrome., El Omari K, De Mesmaeker J, Karia D, Ginn H, Bhattacharya S, Mancini EJ, Proteins. 2011 Sep 29. doi: 10.1002/prot.23208. PMID:22095455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (4a04.pdb1.gz) 169 Kb
  • CSU: Contacts of Structural Units for 4A04
  • Structure Factors (355 Kb)
  • Retrieve 4A04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A04 from S2C, [Save to disk]
  • Re-refined 4a04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A04
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4A04, from MSDmotif at EBI
  • Fold representative 4a04 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a04_B] [4a04_A] [4a04_E] [4a04] [4a04_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A04: [TBOX ] by SMART
  • Other resources with information on 4A04
  • Community annotation for 4A04 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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