4A13 Chaperone date Sep 13, 2011
title Model Refined Against Symmetry-Free Cryo-Em Map Of Tric-Adp
authors Y.Cong, G.F.Schroder, A.S.Meyer, J.Jakana, B.Ma, M.T.Dougherty, M. S.Reissmann, M.Levitt, S.L.Ludtke, J.Frydman, W.Chiu
compound source
Molecule: T-Complex Protein 1 Subunit Beta
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Synonym: Tcp-1-Beta, Cct-Beta, Bovine Tric
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 11.30 Å
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G


Primary referenceSymmetry-free cryo-EM structures of the chaperonin TRiC along its ATPase-driven conformational cycle., Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W, EMBO J. 2011 Nov 1;31(3):720-30. doi: 10.1038/emboj.2011.366. PMID:22045336
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1077 Kb) [Save to disk]
  • Biological Unit Coordinates (4a13.pdb1.gz) 1072 Kb
  • CSU: Contacts of Structural Units for 4A13
  • Retrieve 4A13 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A13 from S2C, [Save to disk]
    • View 4A13 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4A13
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A13, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a13_L] [4a13_H] [4a13_J] [4a13_C] [4a13_M] [4a13_P] [4a13_B] [4a13_O] [4a13] [4a13_E] [4a13_I] [4a13_N] [4a13_A] [4a13_K] [4a13_F] [4a13_D] [4a13_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4A13
  • Community annotation for 4A13 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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