4A20 Protein Binding date Sep 21, 2011
title Crystal Structure Of The Ubl Domain Of Mdy2 (Get5) At 1.78a
authors A.C.Simon, P.J.Simpson, J.W.Murray, R.L.Isaacson
compound source
Molecule: Ubiquitin-Like Protein Mdy2
Chain: A
Fragment: Get5 Ubl-Like Domain, Residues 70-152
Synonym: Golgi To Er Traffic Protein 5, Mating-Deficient Pr Translation Machinery-Associated Protein 24;
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet46
symmetry Space Group: P 32 2 1
R_factor 0.201 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.190 47.190 78.410 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.78 Å
ligand SO4 enzyme
Primary referenceStructure of the Sgt2/Get5 complex provides insights into GET-mediated targeting of tail-anchored membrane proteins., Simon AC, Simpson PJ, Goldstone RM, Krysztofinska EM, Murray JW, High S, Isaacson RL, Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):1327-32. doi:, 10.1073/pnas.1207518110. Epub 2013 Jan 7. PMID:23297211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (4a20.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4A20
  • CSU: Contacts of Structural Units for 4A20
  • Structure Factors (428 Kb)
  • Retrieve 4A20 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A20 from S2C, [Save to disk]
  • Re-refined 4a20 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A20 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A20
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A20, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a20] [4a20_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A20: [UBQ ] by SMART
  • Other resources with information on 4A20
  • Community annotation for 4A20 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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