4A27 Oxidoreductase date Sep 22, 2011
title Crystal Structure Of Human Synaptic Vesicle Membrane Protein Homolog-Like Protein
authors M.Vollmar, N.Shafqat, J.R.C.Muniz, T.Krojer, C.Allerston, F.Von D C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, W.W.Yue, U.Oppe
compound source
Molecule: Synaptic Vesicle Membrane Protein Vat-1 Homolog-L
Chain: A, B
Fragment: Residues 41-389
Synonym: Human Synaptic Vesicle Membrane Protein Vat-1 Homo Protein;
Ec: 1.-.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.509 62.104 83.795 90.00 106.98 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand EDO enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (4a27.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 4A27
  • CSU: Contacts of Structural Units for 4A27
  • Structure Factors (1728 Kb)
  • Retrieve 4A27 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A27 from S2C, [Save to disk]
  • Re-refined 4a27 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A27 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A27
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A27, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a27] [4a27_A] [4a27_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4A27
  • Community annotation for 4A27 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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