4A4F Rna Binding Protein date Oct 12, 2011
title Solution Structure Of Spf30 Tudor Domain In Complex With Sym Dimethylated Arginine
authors K.Tripsianes, T.Madl, M.Machyna, D.Fessas, C.Englbrecht, U.Fische K.M.Neugebauer, M.Sattler
compound source
Molecule: Survival Of Motor Neuron-Related-Splicing Factor
Chain: A
Fragment: Tudor Domain, Residues 65-128
Synonym: Spf30, Kda Splicing Factor Smnrp, Smn-Related Prot Survival Motor Neuron Domain-Containing Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand 2MR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for dimethylarginine recognition by the Tudor domains of human SMN and SPF30 proteins., Tripsianes K, Madl T, Machyna M, Fessas D, Englbrecht C, Fischer U, Neugebauer KM, Sattler M, Nat Struct Mol Biol. 2011 Nov 20. doi: 10.1038/nsmb.2185. PMID:22101937
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (322 Kb) [Save to disk]
  • Biological Unit Coordinates (4a4f.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 4A4F
  • CSU: Contacts of Structural Units for 4A4F
  • Original NMR restraints for 4A4F from PDB
  • Retrieve 4A4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A4F from S2C, [Save to disk]
  • View 4A4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A4F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4A4F, from MSDmotif at EBI
  • Fold representative 4a4f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a4f_A] [4a4f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A4F: [TUDOR ] by SMART
  • Other resources with information on 4A4F
  • Community annotation for 4A4F at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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