4A5X Protein Transport date Oct 28, 2011
title Structures Of Mitd1
authors M.A.Hadders, M.Agromayor, A.Caballe, T.Obita, O.Perisic, R.L.Will J.Martin-Serrano
compound source
Molecule: Mit Domain-Containing Protein 1
Chain: A, B
Fragment: Mit, Residues 9-85
Synonym: Mitd1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_vector: Popth

Molecule: Charged Multivesicular Body Protein 1a
Chain: C, D
Fragment: Residues 184-196
Synonym: Chromatin-Modifying Protein 1a, Chmp1a, Vacuolar P Sorting-Associated Protein 46-1, Vps46-1, Hvps46-1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_vector: Popth
symmetry Space Group: C 2 2 21
R_factor 0.2011 R_Free 0.2265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.070 74.160 89.785 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand GOL, P15 enzyme
Primary referenceESCRT-III binding protein MITD1 is involved in cytokinesis and has an unanticipated PLD fold that binds membranes., Hadders MA, Agromayor M, Obita T, Perisic O, Caballe A, Kloc M, Lamers MH, Williams RL, Martin-Serrano J, Proc Natl Acad Sci U S A. 2012 Oct 8. PMID:23045692
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (4a5x.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4a5x.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 4A5X
  • CSU: Contacts of Structural Units for 4A5X
  • Structure Factors (906 Kb)
  • Retrieve 4A5X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A5X from S2C, [Save to disk]
  • Re-refined 4a5x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A5X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A5X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4A5X, from MSDmotif at EBI
  • Fold representative 4a5x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a5x_C] [4a5x] [4a5x_D] [4a5x_B] [4a5x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A5X: [MIT ] by SMART
  • Other resources with information on 4A5X
  • Community annotation for 4A5X at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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