4A6L Hydrolase date Nov 04, 2011
title Beta-Tryptase Inhibitor
authors M.Mathieu, S.Maignan
compound source
Molecule: Tryptase Alphabeta-1
Chain: A, B, C, D
Synonym: Tryptase-1, Tryptase I, Tryptase Alpha-1, Beta-Try
Ec: 3.4.21.59
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 41
R_factor 0.1884 R_Free 0.2113
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.234 82.234 170.654 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand P43 enzyme Hydrolase E.C.3.4.21.59 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure-based library design and the discovery of a potent and selective mast cell beta-tryptase inhibitor as an oral therapeutic agent., Liang G, Aldous S, Merriman G, Levell J, Pribish J, Cairns J, Chen X, Maignan S, Mathieu M, Tsay J, Sides K, Rebello S, Whitely B, Morize I, Pauls HW, Bioorg Med Chem Lett. 2012 Jan 15;22(2):1049-54. Epub 2011 Dec 7. PMID:22192588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (4a6l.pdb1.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 4A6L
  • CSU: Contacts of Structural Units for 4A6L
  • Structure Factors (473 Kb)
  • Retrieve 4A6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A6L from S2C, [Save to disk]
  • Re-refined 4a6l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A6L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A6L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a6l] [4a6l_C] [4a6l_B] [4a6l_A] [4a6l_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A6L: [Tryp_SPc ] by SMART
  • Other resources with information on 4A6L
  • Community annotation for 4A6L at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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