4A8Q Transferase Dna date Nov 21, 2011
title Non-Catalytic Ions Direct The Rna-Dependent Rna Polymerase Of Bacterial Dsrna Virus Phi6 From De Novo Initiation To Elongation
authors S.Wright, M.M.Poranen, D.H.Bamford, D.I.Stuart, J.M.Grimes
compound source
Molecule: Rna-Directed Rna Polymerase
Chain: A, B, C
Synonym: Protein P2, P2 Polymerase
Engineered: Yes
Organism_scientific: Pseudomonas Phage Phi6
Organism_taxid: 10879
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-D(Dtptpcpgpcpgp)-3'
Chain: F, G, H
Engineered: Yes

Organism_scientific: Pseudomonas Phage Phi6
Organism_taxid: 10879
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.2048 R_Free 0.2201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.440 92.850 141.230 90.00 101.85 90.00
method X-Ray Diffractionresolution 3.06 Å
ligand ATP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • RNA-directed 5'-3' RNA polym...


  • Primary referenceNoncatalytic ions direct the RNA-dependent RNA polymerase of bacterial double-stranded RNA virus varphi6 from de novo initiation to elongation., Wright S, Poranen MM, Bamford DH, Stuart DI, Grimes JM, J Virol. 2012 Mar;86(5):2837-49. Epub 2011 Dec 28. PMID:22205747
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (671 Kb) [Save to disk]
  • Biological Unit Coordinates (4a8q.pdb1.gz) 225 Kb
  • Biological Unit Coordinates (4a8q.pdb2.gz) 225 Kb
  • Biological Unit Coordinates (4a8q.pdb3.gz) 224 Kb
  • LPC: Ligand-Protein Contacts for 4A8Q
  • CSU: Contacts of Structural Units for 4A8Q
  • Structure Factors (872 Kb)
  • Retrieve 4A8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A8Q from S2C, [Save to disk]
  • Re-refined 4a8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Electron Density related parameters from EDS Electron Density Server, at Upsala
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  • 3D motif for 4A8Q, from MSDmotif at EBI
  • Fold representative 4a8q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a8q_B] [4a8q_A] [4a8q] [4a8q_H] [4a8q_F] [4a8q_G] [4a8q_C]
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