4A8X Transcription date Nov 21, 2011
title Structure Of The Core Asap Complex
authors A.G.Murachelli, J.Ebert, C.Basquin, H.Le Hir, E.Conti
compound source
Molecule: Rna-Binding Protein With Serine-Rich Domain 1
Chain: A
Fragment: Rrm Domain, Residues 122-207
Synonym: Rnps1, Sr-Related Protein Ldc2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_plasmid: Pet Series

Molecule: Hook-Like, Isoform A
Chain: B
Fragment: Rsb Domain, Residues 648-687
Synonym: Acinus, Hook-Like, Isoform B, Ld23757p
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_common: Human Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_plasmid: Pet Series

Molecule: Histone Deacetylase Complex Subunit Sap18
Chain: C
Fragment: Residues 14-143
Synonym: Sap18,18 Kda Sin3-Associated Polypeptide, Sin3-Ass Polypeptide P18;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Human
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_plasmid: Pet Series
symmetry Space Group: P 1 21 1
R_factor 0.1856 R_Free 0.2256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.868 73.331 50.754 90.00 110.99 90.00
method X-Ray Diffractionresolution 1.90 Å
note 4A8X is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of the ASAP core complex reveals the existence of a Pinin-containing PSAP complex., Murachelli AG, Ebert J, Basquin C, Le Hir H, Conti E, Nat Struct Mol Biol. 2012 Mar 4;19(4):378-86. doi: 10.1038/nsmb.2242. PMID:22388736
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (4a8x.pdb1.gz) 118 Kb
  • CSU: Contacts of Structural Units for 4A8X
  • Structure Factors (1048 Kb)
  • Retrieve 4A8X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A8X from S2C, [Save to disk]
  • Re-refined 4a8x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A8X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A8X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4A8X, from MSDmotif at EBI
  • Fold representative 4a8x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a8x_C] [4a8x_A] [4a8x] [4a8x_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A8X: [RRM ] by SMART
  • Other resources with information on 4A8X
  • Community annotation for 4A8X at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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