4AA0 Transferase date Nov 30, 2011
title P38alpha Map Kinase Bound To Cmpd 2
authors S.Gerhardt, D.Hargreaves
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Cytokine Suppressive Anti- Inflammatory Drug-Binding Protein, Csaid-Binding Protein, C Kinase Mxi2, Max-Interacting Protein 2, Mitogen-Activated P Kinase P38 Alpha, Map Kinase P38 Alpha, Stress-Activated Pr Kinase 2a, Sapk2a, P38alpha Map Kinase;
Ec: 2.7.11.24, 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7 3.3
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.520 76.060 78.361 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand AA0 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe discovery of N-cyclopropyl-4-methyl-3-[6-(4-methylpiperazin-1-yl)-4-oxoquinazolin-3(4H)-yl]ben zamide (AZD6703), a clinical p38alpha MAP kinase inhibitor for the treatment of inflammatory diseases., Brown DS, Cumming JG, Bethel P, Finlayson J, Gerhardt S, Nash I, Pauptit RA, Pike KG, Reid A, Snelson W, Swallow S, Thompson C, Bioorg Med Chem Lett. 2012 Jun 15;22(12):3879-83. Epub 2012 May 2. PMID:22608965
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (4aa0.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 4AA0
  • CSU: Contacts of Structural Units for 4AA0
  • Structure Factors (251 Kb)
  • Retrieve 4AA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AA0 from S2C, [Save to disk]
  • Re-refined 4aa0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AA0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AA0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aa0] [4aa0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AA0: [S_TKc ] by SMART
  • Other resources with information on 4AA0
  • Community annotation for 4AA0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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