4ABX Dna Binding Protein date Dec 12, 2011
title Crystal Structure Of Deinococcus Radiodurans Recn Coiled- Coil Domain
authors S.Pellegrino, J.Radzimanowski, D.De Sanctis, S.Mcsweeney, J.Timm
compound source
Molecule: Dna Repair Protein Recn
Chain: A, B, C, D
Fragment: Coiled-Coil Domain, Residues 196-364
Synonym: Recombination Protein N, Recn
Engineered: Yes
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 243230
Strain: R1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Star
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-151 Topo
symmetry Space Group: P 1 21 1
R_factor 0.2008 R_Free 0.2502
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.210 43.970 133.630 90.00 97.71 90.00
method X-Ray Diffractionresolution 2.04 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural and Functional Characterization of an SMC-like Protein RecN: New Insights into Double-Strand Break Repair., Pellegrino S, Radzimanowski J, de Sanctis D, Boeri Erba E, McSweeney S, Timmins J, Structure. 2012 Dec 5;20(12):2076-89. doi: 10.1016/j.str.2012.09.010. Epub 2012, Oct 18. PMID:23085075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (4abx.pdb1.gz) 108 Kb
  • Biological Unit Coordinates (4abx.pdb2.gz) 108 Kb
  • CSU: Contacts of Structural Units for 4ABX
  • Structure Factors (2530 Kb)
  • Retrieve 4ABX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ABX from S2C, [Save to disk]
  • Re-refined 4abx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ABX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ABX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ABX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4abx_A] [4abx_C] [4abx_B] [4abx_D] [4abx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ABX
  • Community annotation for 4ABX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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