4AC7 Hydrolase date Dec 14, 2011
title The Crystal Structure Of Sporosarcina Pasteurii Urease In Co Citrate
authors S.Benini, P.Kosikowska, M.Cianci, A.Gonzalez Vara, L.Berlicki, S.
compound source
Molecule: Urease Subunit Gamma
Chain: A
Synonym: Urea Amidohydrolase Subunit Gamma
Ec: 3.5.1.5
Organism_scientific: Sporosarcina Pasteurii
Organism_taxid: 1474
Strain: Dsm33

Molecule: Urease Subunit Beta
Chain: B
Synonym: Urea Amidohydrolase Subunit Beta
Ec: 3.5.1.5

Organism_scientific: Sporosarcina Pasteurii
Organism_taxid: 1474
Strain: Dsm33

Molecule: Urease Subunit Alpha
Chain: C
Synonym: Urea Amidohydrolase Subunit Alpha
Ec: 3.5.1.5

Organism_scientific: Sporosarcina Pasteurii
Organism_taxid: 1474
Strain: Dsm33
symmetry Space Group: P 63 2 2
R_factor 0.117 R_Free 0.146
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.555 131.555 189.521 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand CXM, EDO, FLC, KCX, NI, OH, SO4 enzyme Hydrolase E.C.3.5.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceThe crystal structure of Sporosarcina pasteurii urease in a complex with citrate provides new hints for inhibitor design., Benini S, Kosikowska P, Cianci M, Mazzei L, Vara AG, Berlicki L, Ciurli S, J Biol Inorg Chem. 2013 Mar;18(3):391-9. doi: 10.1007/s00775-013-0983-7. Epub, 2013 Feb 15. PMID:23412551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (275 Kb) [Save to disk]
  • Biological Unit Coordinates (4ac7.pdb1.gz) 795 Kb
  • LPC: Ligand-Protein Contacts for 4AC7
  • CSU: Contacts of Structural Units for 4AC7
  • Structure Factors (2094 Kb)
  • Retrieve 4AC7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AC7 from S2C, [Save to disk]
  • Re-refined 4ac7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AC7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AC7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ac7_A] [4ac7_C] [4ac7] [4ac7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AC7
  • Community annotation for 4AC7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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