4ADL Lyase date Dec 26, 2011
title Crystal Structures Of Rv1098c In Complex With Malate
authors A.E.Mechaly, A.Haouz, I.Miras, P.Weber, W.Shepard, S.Cole, P.M.Alz M.Bellinzoni
compound source
Molecule: Fumarate Hydratase Class II
Chain: A, B, C, D
Synonym: Fumarase C
Ec: 4.2.1.2
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pdest17
symmetry Space Group: C 1 2 1
R_factor 0.154 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
271.530 98.130 90.000 90.00 101.34 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand LMR enzyme Lyase E.C.4.2.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceConformational changes upon ligand binding in the essential class II fumarase Rv1098c from Mycobacterium tuberculosis., Mechaly AE, Haouz A, Miras I, Barilone N, Weber P, Shepard W, Alzari PM, Bellinzoni M, FEBS Lett. 2012 Jun 4;586(11):1606-11. Epub 2012 May 3. PMID:22561013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (572 Kb) [Save to disk]
  • Biological Unit Coordinates (4adl.pdb1.gz) 562 Kb
  • LPC: Ligand-Protein Contacts for 4ADL
  • CSU: Contacts of Structural Units for 4ADL
  • Structure Factors (992 Kb)
  • Retrieve 4ADL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ADL from S2C, [Save to disk]
  • Re-refined 4adl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ADL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ADL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ADL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4adl] [4adl_A] [4adl_C] [4adl_B] [4adl_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ADL
  • Community annotation for 4ADL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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