4AE2 Structural Protein date Jan 05, 2012
title Crystal Structure Of Human Fibrillar Procollagen Type III C- Propeptide Trimer
authors J.M.Bourhis, N.Mariano, Y.Zhao, K.Harlos, E.Y.Jones, C.Moali, N.Ag D.J.Hulmes
compound source
Molecule: Collagen Alpha-1(III) Chain
Chain: A, B, C
Fragment: Cpropeptide Of Procollagen III, Residues 1222-146
Synonym: Procollagen III
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.450 90.360 102.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand CA, NO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural basis of fibrillar collagen trimerization and related genetic disorders., Bourhis JM, Mariano N, Zhao Y, Harlos K, Exposito JY, Jones EY, Moali C, Aghajari N, Hulmes DJ, Nat Struct Mol Biol. 2012 Oct;19(10):1031-6. doi: 10.1038/nsmb.2389. Epub 2012, Sep 23. PMID:23001006
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (4ae2.pdb1.gz) 224 Kb
  • LPC: Ligand-Protein Contacts for 4AE2
  • CSU: Contacts of Structural Units for 4AE2
  • Structure Factors (686 Kb)
  • Retrieve 4AE2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AE2 from S2C, [Save to disk]
  • Re-refined 4ae2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AE2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AE2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AE2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b4ae2, region E:79-149 [Jmol] [rasmolscript] [script source]
  • Fold representative 4ae2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ae2_C] [4ae2_A] [4ae2] [4ae2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AE2: [COLFI ] by SMART
  • Other resources with information on 4AE2
  • Community annotation for 4AE2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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