4AF3 Transferase Inhibitor date Jan 16, 2012
title Human Aurora B Kinase In Complex With Incenp And Vx-680
authors J.M.Elkins, M.Vollmar, J.Wang, S.Picaud, C.H.Arrowsmith, A.Edward C.Bountra, F.Von Delft, S.Knapp
compound source
Molecule: Aurora Kinase B
Chain: A
Fragment: Residues 55-344
Synonym: Aurora 1, Aurora B, Aurora- And Ipl1-Like Midbody- Protein 1, Aim-1, Auroraipl1-Related Kinase 2, Ark-2, Auro Kinase 2, Stk-1, Serinethreonine 12 -Protein Kinase Serinethreonine-Protein Kinase 5, Serinethreonine-Protein Aurora-B;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pnic28-Bsa4
Other_details: Mammalian Gene Collection Image 2819846

Molecule: Inner Centromere Protein
Chain: D
Fragment: Residues 835-903
Synonym: Incenp
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgtvl1-Sgc
symmetry Space Group: P 31 2 1
R_factor 0.205 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.145 80.145 92.542 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand VX6 BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


D


Primary referenceCrystal Structure of Human Aurora B in Complex with INCENP and VX-680., Elkins JM, Santaguida S, Musacchio A, Knapp S, J Med Chem. 2012 Sep 13;55(17):7841-8. Epub 2012 Sep 4. PMID:22920039
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (4af3.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 4AF3
  • CSU: Contacts of Structural Units for 4AF3
  • Structure Factors (100 Kb)
  • Retrieve 4AF3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AF3 from S2C, [Save to disk]
  • Re-refined 4af3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AF3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AF3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AF3, from MSDmotif at EBI
  • Fold representative 4af3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4af3] [4af3_D] [4af3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AF3: [S_TKc ] by SMART
  • Other resources with information on 4AF3
  • Community annotation for 4AF3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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