4AFL Cell Cycle date Jan 19, 2012
title The Crystal Structure Of The Ing4 Dimerization Domain Reveals The Functional Organization Of The Ing Family Of Chromatin Binding Proteins.
authors S.Culurgioni, I.G.Munoz, A.Moreno, A.Palacios, M.Villate, I.Palme G.Montoya, F.J.Blanco
compound source
Molecule: Inhibitor Of Growth Protein 4
Chain: A, B, C, D, E, F
Fragment: N-Terminal Dimerization Domain, Residues 2-105
Synonym: P29ing4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet11d
symmetry Space Group: C 2 2 2
R_factor 0.2046 R_Free 0.2560
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.450 186.600 62.220 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand MSE enzyme
note 4AFL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceThe crystal structure of the inhibitor of growth 4 (ING4) dimerization domain reveals the functional organization of the ING family of chromatin binding proteins., Culurgioni S, Munoz IG, Moreno A, Palacios A, Villate M, Palmero I, Montoya G, Blanco FJ, J Biol Chem. 2012 Feb 9. PMID:22334692
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (4afl.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (4afl.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (4afl.pdb3.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4AFL
  • CSU: Contacts of Structural Units for 4AFL
  • Structure Factors (259 Kb)
  • Retrieve 4AFL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AFL from S2C, [Save to disk]
  • Re-refined 4afl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AFL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AFL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AFL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4afl_D] [4afl_E] [4afl_F] [4afl] [4afl_C] [4afl_A] [4afl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AFL: [ING ] by SMART
  • Other resources with information on 4AFL
  • Community annotation for 4AFL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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