4AG8	Transferase	date	Jan 24, 2012
title	Crystal Structure Of The Vegfr2 Kinase Domain In Complex Wit (Ag-013736) (N-Methyl-2-(3-((E)-2-Pyridin-2-Yl-Vinyl)-1h- I Ylsulfanyl)-Benzamide)
authors	M.Mctigue, J.Wickersham, C.Pinko, R.S.Kania, S.Bender
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Fragment: Kinase Domain, Residues 806-940,990-1171 Synonym: Vegfr-2, Fetal Liver Kinase 1, Flk-1, Kinase Inser Receptor, Kdr, Protein-Tyrosine Kinase Receptor Flk-1, Cd30 Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacsg2
symmetry	Space Group: C 1 2 1	R_factor 0.195 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.660 57.221 51.829 90.00 93.44 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	AXI	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Feature Article: Molecular conformations, interactions, and properties associated with drug efficiency and clinical performance among VEGFR TK inhibitors., McTigue M, Murray BW, Chen JH, Deng YL, Solowiej J, Kania RS, Proc Natl Acad Sci U S A. 2012 Sep 17. PMID:22988103

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (4ag8.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 4AG8 CSU: Contacts of Structural Units for 4AG8 Structure Factors (384 Kb) Retrieve 4AG8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AG8 from S2C, [Save to disk] Re-refined 4ag8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AG8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ag8] [4ag8_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4AG8: [TyrKc ] by SMART

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Community annotation for 4AG8 at PDBWiki (http://pdbwiki.org)

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