4AGI Sugar Binding Protein date Jan 30, 2012
title Crystal Structure Of Fucose Binding Lectin From Aspergillus (Afl) In Complex With Seleno Fucoside.
authors J.Houser, J.Komarek, N.Kostlanova, M.Lahmann, G.Cioci, A.Varrot, A M.Wimmerova
compound source
Molecule: Fucose-Specific Lectin Flea
Chain: A, B, C, D
Synonym: Fucose Specific Lectin Afl
Engineered: Yes
Mutation: Yes
 Organism_scientific: Aspergillus Fumigatus
Organism_taxid: 5085
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1
R_factor 0.152 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.691 79.847 84.389 91.09 88.89 103.00
method X-Ray Diffractionresolution 1.60 Å
ligand CSD, CSK, SFU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA Soluble Fucose-Specific Lectin from Aspergillus fumigatus Conidia - Structure, Specificity and Possible Role in Fungal Pathogenicity., Houser J, Komarek J, Kostlanova N, Cioci G, Varrot A, Kerr SC, Lahmann M, Balloy V, Fahy JV, Chignard M, Imberty A, Wimmerova M, PLoS One. 2013 Dec 10;8(12):e83077. doi: 10.1371/journal.pone.0083077. PMID:24340081
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (227 Kb) [Save to disk]
  • Biological Unit Coordinates (4agi.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (4agi.pdb2.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 4AGI
  • CSU: Contacts of Structural Units for 4AGI
  • Structure Factors (7483 Kb)
  • Retrieve 4AGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AGI from S2C, [Save to disk]
  • Re-refined 4agi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4AGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4AGI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AGI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4agi_D] [4agi] [4agi_C] [4agi_A] [4agi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4AGI
  • Community annotation for 4AGI at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science