4AGM	Cell Cycle	date	Jan 30, 2012
title	Structure Of The P53 Core Domain Mutant Y220c Bound To The Stabilizing Small Molecule Phikan5086
authors	A.C.Joerger, R.Wilcken, F.M.Boeckler, A.R.Fersht
compound		source
Molecule: Cellular Tumor Antigen P53 Chain: A, B Fragment: Dna-Binding Domain, Residues 94-312 Synonym: Antigen Ny-Co-13, Phosphoprotein P53, Tumor Suppre Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.1725 R_Free 0.1974
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.980 71.170 104.960 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.52 Å
ligand	P86, ZN	enzyme
Primary reference	Halogen-Enriched Fragment Libraries as Leads for Drug Rescue of Mutant p53., Wilcken R, Liu X, Zimmermann MO, Rutherford TJ, Fersht AR, Joerger AC, Boeckler FM, J Am Chem Soc. 2012 Apr 18;134(15):6810-8. Epub 2012 Apr 5. PMID:22439615

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (4agm.pdb1.gz) 40 Kb Biological Unit Coordinates (4agm.pdb2.gz) 40 Kb LPC: Ligand-Protein Contacts for 4AGM CSU: Contacts of Structural Units for 4AGM Structure Factors (3889 Kb) Retrieve 4AGM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AGM from S2C, [Save to disk] Re-refined 4agm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AGM in 3D

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Visual 3D analysis of 4AGM

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4AGM, from MSDmotif at EBI Fold representative 4agm from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4agm_A] [4agm_B] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 4AGM with the sequences similar proteins can be viewed for 4AGM's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 4AGM

Community annotation for 4AGM at PDBWiki (http://pdbwiki.org)

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