4AGQ Cell Cycle date Jan 30, 2012
title Structure Of The P53 Core Domain Mutant Y220c Bound To The Stabilizing Small Molecule Phikan5196
authors A.C.Joerger, R.Wilcken, F.M.Boeckler, A.R.Fersht
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B
Fragment: Dna-Binding Domain, Residues 94-312
Synonym: Antigen Ny-Co-13, Phosphoprotein P53, Tumor Suppre
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.1770 R_Free 0.1923
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.038 71.242 104.938 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.42 Å
ligand P96, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHalogen-Enriched Fragment Libraries as Leads for Drug Rescue of Mutant p53., Wilcken R, Liu X, Zimmermann MO, Rutherford TJ, Fersht AR, Joerger AC, Boeckler FM, J Am Chem Soc. 2012 Apr 18;134(15):6810-8. Epub 2012 Apr 5. PMID:22439615
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4agq.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (4agq.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4AGQ
  • CSU: Contacts of Structural Units for 4AGQ
  • Structure Factors (4526 Kb)
  • Retrieve 4AGQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AGQ from S2C, [Save to disk]
  • Re-refined 4agq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AGQ in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AGQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AGQ, from MSDmotif at EBI
  • Fold representative 4agq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4agq] [4agq_B] [4agq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AGQ
  • Community annotation for 4AGQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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