4AHY Sugar Binding Protein date Feb 07, 2012
title Flo5a Cocrystallized With 3 Mm Gdac3
authors M.Veelders, L.O.Essen
compound source
Molecule: Flocculation Protein Flo5
Chain: A
Fragment: Lectin-Like Domain Residues 23-271
Synonym: Flocculin-5 Fl05a
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Atcc: 204508
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K-12
Expression_system_variant: Origami 2
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.300 61.760 106.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, GD enzyme
Primary referenceComplex Gadolinium-Oxo Clusters Formed along Concave Protein Surfaces., Veelders M, Essen LO, Chembiochem. 2012 Aug 31. doi: 10.1002/cbic.201200441. PMID:22936626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (4ahy.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4AHY
  • CSU: Contacts of Structural Units for 4AHY
  • Structure Factors (1951 Kb)
  • Retrieve 4AHY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AHY from S2C, [Save to disk]
  • Re-refined 4ahy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AHY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AHY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AHY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ahy] [4ahy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AHY: [PA14 ] by SMART
  • Other resources with information on 4AHY
  • Community annotation for 4AHY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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