4AIK Transcription date Feb 10, 2012
title Crystal Structure Of Rova From Yersinia In Complex With An I Promoter Fragment
authors N.Quade, C.Mendonca, K.Herbst, A.K.Heroven, D.W.Heinz, P.Dersch
compound source
Molecule: Transcriptional Regulator Slya
Chain: A, B
Synonym: Regulator Of Virulence Protein A, Transcriptional For Cryptic Hemolysin, Rova;
Engineered: Yes
Mutation: Yes
Organism_scientific: Yersinia Pseudotuberculosis
Organism_taxid: 633
Strain: Ypiii
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: Rova Promoter Fragment, 5'-D(Aptpgpaptpapt Aptptptpaptpaptpgpaptpapa)-3';
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Yersinia Pseudotuberculosis
Organism_taxid: 633

Molecule: Rova Promoter Fragment, 5'-D(Tptptpaptpcpa Aptpapapaptpapaptpaptpcpa)-3';
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Yersinia Pseudotuberculosis
Organism_taxid: 633
symmetry Space Group: P 3
R_factor 0.198 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.678 88.678 67.503 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • bacterial-type RNA polymeras...


  • Primary referenceStructural basis for intrinsic thermosensing by the master virulence regulator RovA of Yersinia., Quade N, Mendonca C, Herbst K, Heroven AK, Ritter C, Heinz DW, Dersch P, J Biol Chem. 2012 Aug 30. PMID:22936808
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (4aik.pdb1.gz) 131 Kb
  • CSU: Contacts of Structural Units for 4AIK
  • Structure Factors (647 Kb)
  • Retrieve 4AIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AIK from S2C, [Save to disk]
  • Re-refined 4aik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AIK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aik_C] [4aik_B] [4aik] [4aik_A] [4aik_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AIK: [HTH_MARR ] by SMART
  • Other resources with information on 4AIK
  • Community annotation for 4AIK at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science