4AIW Lipid Binding Protein date Feb 15, 2012
title Gapr-1 With Bound Inositol Hexakisphosphate
authors A.Schouten, P.Gros, J.B.Helms
compound source
Molecule: Golgi-Associated Plant Pathogenesis-Related Prote
Chain: A
Synonym: Gapr-1, Golgi-Associated Pr-1 Protein, Glioma Path Related Protein 2, Glipr 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K-12
Expression_system_variant: Xl-1
Expression_system_vector_type: Plasmid
Expression_system_vector: Pqe60
symmetry Space Group: C 2 2 21
R_factor 0.152 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.088 64.872 103.059 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand IHP, OCS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInteraction of GAPR-1 with lipid bilayers is regulated by alternative homodimerization., van Galen J, Olrichs NK, Schouten A, Serrano RL, Nolte-'t Hoen EN, Eerland R, Kaloyanova D, Gros P, Helms JB, Biochim Biophys Acta. 2012 Sep;1818(9):2175-83. Epub 2012 Apr 26. PMID:22560898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4aiw.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4AIW
  • CSU: Contacts of Structural Units for 4AIW
  • Structure Factors (1102 Kb)
  • Retrieve 4AIW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AIW from S2C, [Save to disk]
  • Re-refined 4aiw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AIW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AIW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AIW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aiw_A] [4aiw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AIW: [SCP ] by SMART
  • Other resources with information on 4AIW
  • Community annotation for 4AIW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science