4AJ0	Immune System	date	Feb 15, 2012
title	Crystallographic Structure Of An Amyloidogenic Variant, 3rcw Germinal Line Lambda 3
authors	M.I.Villalba, O.D.Luna, E.Rudino-Pinera, R.Sanchez, R.Sanchez-Lo S.Rojas-Trejo, T.Olamendi-Portugal, D.A.Fernandez-Velasco, B.B
compound		source
Molecule: Germinal Line Lambda 3 3rcw Variant Chain: A, B, C, D Fragment: Variable Domain Variant Of 3rjl2, Residues 1-107 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet22b
symmetry	Space Group: P 31	R_factor 0.174 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.807 41.807 171.035 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	ACT, PG0	enzyme
Primary reference	Site-directed Mutagenesis Reveals Regions Implicated in the Stability and Fiber Formation of Human lambda3r Light Chains., Villalba MI, Canul-Tec JC, Luna-Martinez OD, Sanchez-Alcala R, Olamendi-Portugal T, Rudino-Pinera E, Rojas S, Sanchez-Lopez R, Fernandez-Velasco DA, Becerril B, J Biol Chem. 2014 Dec 11. pii: jbc.M114.629550. PMID:25505244

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (4aj0.pdb1.gz) 40 Kb Biological Unit Coordinates (4aj0.pdb2.gz) 40 Kb LPC: Ligand-Protein Contacts for 4AJ0 CSU: Contacts of Structural Units for 4AJ0 Structure Factors (479 Kb) Retrieve 4AJ0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AJ0 from S2C, [Save to disk] Re-refined 4aj0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AJ0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4AJ0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AJ0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4aj0_B] [4aj0_A] [4aj0_D] [4aj0] [4aj0_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4AJ0: [IGv ] by SMART

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