4AK3 Structural Protein date Feb 21, 2012
title Crystal Structure Of Human Fibrillar Procollagen Type III C- Propeptide Trimer
authors J.M.Bourhis, N.Mariano, Y.Zhao, K.Harlos, E.Y.Jones, C.Moali, N.Ag D.J.S.Hulmes
compound source
Molecule: Collagen Alpha-1(III) Chain
Chain: A
Fragment: Cpropeptide, Residues 1222-1466
Synonym: Procollagen III
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_plasmid: Phlsec
symmetry Space Group: P 3 2 1
R_factor 0.28276 R_Free 0.33715
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.047 86.047 72.952 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of fibrillar collagen trimerization and related genetic disorders., Bourhis JM, Mariano N, Zhao Y, Harlos K, Exposito JY, Jones EY, Moali C, Aghajari N, Hulmes DJ, Nat Struct Mol Biol. 2012 Oct;19(10):1031-6. doi: 10.1038/nsmb.2389. Epub 2012, Sep 23. PMID:23001006
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (4ak3.pdb1.gz) 199 Kb
  • LPC: Ligand-Protein Contacts for 4AK3
  • CSU: Contacts of Structural Units for 4AK3
  • Structure Factors (208 Kb)
  • Retrieve 4AK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AK3 from S2C, [Save to disk]
  • Re-refined 4ak3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AK3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AK3, from MSDmotif at EBI
  • Fold representative 4ak3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ak3_A] [4ak3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AK3: [COLFI ] by SMART
  • Other resources with information on 4AK3
  • Community annotation for 4AK3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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