4AP8 Transferase date Mar 30, 2012
title Crystal Structure Of Human Molybdopterin Synthase Catalytic Subunit (Mocs2b)
authors M.Vollmar, W.Kiyani, T.Krojer, S.Goubin, C.Allerston, D.S.Froese, F.Von Delft, N.Burgess-Brown, C.Bountra, C.H.Arrowsmith, A.Edwa W.W.Yue
compound source
Molecule: Molybdopterin Synthase Catalytic Subunit
Chain: A, B, C, D
Fragment: Catalytic Subunit Residues 38-172
Synonym: Moco1-B, Molybdenum Cofactor Synthesis Protein 2 L Subunit, Molybdenum Cofactor Synthesis Protein 2b, Mocs2b, Molybdopterin-Synthase Large Subunit, Mpt Synthase Large S
Ec: 2.8.1.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31 2 1
R_factor 0.17158 R_Free 0.19932
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.968 138.968 159.574 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.78 Å
ligand EDO, GOL enzyme Transferase E.C.2.8.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (4ap8.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (4ap8.pdb2.gz) 91 Kb
  • Biological Unit Coordinates (4ap8.pdb3.gz) 90 Kb
  • Biological Unit Coordinates (4ap8.pdb4.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4AP8
  • CSU: Contacts of Structural Units for 4AP8
  • Structure Factors (2127 Kb)
  • Retrieve 4AP8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AP8 from S2C, [Save to disk]
  • Re-refined 4ap8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AP8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AP8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AP8, from MSDmotif at EBI
  • Fold representative 4ap8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ap8_A] [4ap8] [4ap8_C] [4ap8_B] [4ap8_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AP8
  • Community annotation for 4AP8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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