4APC Transferase date Apr 02, 2012
title Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
authors J.M.Elkins, T.D.M.Hanchuk, D.V.Lovato, F.L.Basei, G.V.Meirelles, M.Szklarz, M.Vollmar, P.Mahajan, P.Rellos, Y.Zhang, T.Krojer, A.C C.Bountra, C.Arrowsmith, A.Edwards, S.Knapp
compound source
Molecule: Serinethreonine-Protein Kinase Nek1
Chain: A, B
Fragment: Kinase Domain, Residues 1-238
Synonym: Never In Mitosis A-Related Kinase 1, Nima-Related Kinase 1, Renal Carcinoma Antigen Ny-Ren-55;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.21457 R_Free 0.24768
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.910 92.810 163.940 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CL enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4apc.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4apc.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4APC
  • CSU: Contacts of Structural Units for 4APC
  • Structure Factors (2121 Kb)
  • Retrieve 4APC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4APC from S2C, [Save to disk]
  • Re-refined 4apc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4APC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4APC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4APC, from MSDmotif at EBI
  • Fold representative 4apc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4apc_B] [4apc] [4apc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4APC: [S_TKc ] by SMART
  • Other resources with information on 4APC
  • Community annotation for 4APC at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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