4APF Cell Cycle date Apr 02, 2012
title Crystal Structure Of The Human Klhl11-Cul3 Complex At 3.1a R
authors P.Canning, C.D.O.Cooper, T.Krojer, M.Vollmar, E.Ugochukwu, J.R.C. V.Ayinampudi, P.Savitsky, C.H.Arrowsmith, A.M.Edwards, C.Bountr Delft, A.N.Bullock, Structural Genomics Consortium (Sgc)
compound source
Molecule: Kelch-Like Protein 11
Chain: A
Fragment: Btb Domain, Back Domain, Residues 67-340
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_variant: R3 Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Cullin 3
Chain: B
Fragment: N-Terminal Domain, Residues 23-388
Synonym: Cul-3
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Cthf
symmetry Space Group: C 1 2 1
R_factor 0.193 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
238.640 41.440 147.780 90.00 110.20 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural basis for Cul3 assembly with the BTB-Kelch family of E3 ubiquitin ligases., Canning P, Cooper CD, Krojer T, Murray JW, Pike AC, Chaikuad A, Keates T, Thangaratnarajah C, Hojzan V, Marsden BD, Gileadi O, Knapp S, von Delft F, Bullock AN, J Biol Chem. 2013 Jan 24. PMID:23349464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (4apf.pdb1.gz) 397 Kb
  • CSU: Contacts of Structural Units for 4APF
  • Structure Factors (343 Kb)
  • Retrieve 4APF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4APF from S2C, [Save to disk]
  • Re-refined 4apf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4APF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4APF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4APF, from MSDmotif at EBI
  • Fold representative 4apf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4apf_B] [4apf_A] [4apf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4APF: [BACK] [BTB ] by SMART
  • Other resources with information on 4APF
  • Community annotation for 4APF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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