4AQL Hydrolase date Apr 18, 2012
title Human Guanine Deaminase In Complex With Valacyclovir
authors M.Welin, L.Egeblad, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Coll A.M.Edwards, S.Flodin, S.Graslund, M.Hammarstrom, I.Johansson, T.Karlberg, T.Kotenyova, M.Moche, T.Nyman, C.Persson, H.Schuler, A.G.Thorsell, L.Tresaugues, J.Weigelt, P.Nordlund
compound source
Molecule: Guanine Deaminase
Chain: A
Synonym: Guanase, Guanine Aminase, Guanine Aminohydrolase, Nedasin;
Ec: 3.5.4.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pnic-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.181 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.729 91.383 131.913 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand TXC, ZN enzyme Hydrolase E.C.3.5.4.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePan-Pathway Based Interaction Profiling of FDA-Approved Nucleoside and Nucleobase Analogs with Enzymes of the Human Nucleotide Metabolism., Egeblad L, Welin M, Flodin S, Graslund S, Wang L, Balzarini J, Eriksson S, Nordlund P, PLoS One. 2012;7(5):e37724. Epub 2012 May 25. PMID:22662200
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4aql.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 4AQL
  • CSU: Contacts of Structural Units for 4AQL
  • Structure Factors (1945 Kb)
  • Retrieve 4AQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AQL from S2C, [Save to disk]
  • Re-refined 4aql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AQL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AQL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aql_A] [4aql]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AQL
  • Community annotation for 4AQL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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