4AQY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AM2, K, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


V


Primary referenceDissociation of antibacterial activity and aminoglycoside ototoxicity in the 4-monosubstituted 2-deoxystreptamine apramycin., Matt T, Ng CL, Lang K, Sha SH, Akbergenov R, Shcherbakov D, Meyer M, Duscha S, Xie J, Dubbaka SR, Perez-Fernandez D, Vasella A, Ramakrishnan V, Schacht J, Bottger EC, Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10984-9. Epub 2012 Jun 14. PMID:22699498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1024 Kb) [Save to disk]
  • Biological Unit Coordinates (4aqy.pdb1.gz) 1005 Kb
  • LPC: Ligand-Protein Contacts for 4AQY
  • CSU: Contacts of Structural Units for 4AQY
  • Structure Factors (1591 Kb)
  • Retrieve 4AQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AQY from S2C, [Save to disk]
  • Re-refined 4aqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4AQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aqy_F] [4aqy] [4aqy_A] [4aqy_B] [4aqy_C] [4aqy_D] [4aqy_E] [4aqy_G] [4aqy_H] [4aqy_I] [4aqy_J] [4aqy_K] [4aqy_L] [4aqy_M] [4aqy_N] [4aqy_O] [4aqy_P] [4aqy_Q] [4aqy_R] [4aqy_S] [4aqy_T] [4aqy_V] [4aqy_W] [4aqy_Z]
  • SWISS-PROT database:
  • Domains found in 4AQY: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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