4AT5 Transferase date May 03, 2012
title Crystal Structure Of Trkb Kinase Domain In Complex With Gw25
authors T.Bertrand, M.Kothe, J.Liu, A.Dupuy, A.Rak, P.F.Berne, S.Davis, T.Gladysheva, C.Valtre, J.Y.Crenne, M.Mathieu
compound source
Molecule: Bdnfnt-3 Growth Factors Receptor
Chain: A
Fragment: Kinase Domain, Residues 543-838
Synonym: Gp145-Trkb, Trk-B, Neurotrophic Tyrosine Kinase Re Type 2, Trkb Tyrosine Kinase, Tropomyosin-Related Kinase B;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 2
R_factor 0.158 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.540 94.190 46.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand GOL, MUJ BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Crystal Structures of TrkA and TrkB Suggest Key Regions for Achieving Selective Inhibition., Bertrand T, Kothe M, Liu J, Dupuy A, Rak A, Berne PF, Davis S, Gladysheva T, Valtre C, Crenne JY, Mathieu M, J Mol Biol. 2012 Aug 16. PMID:22902478
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4at5.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4AT5
  • CSU: Contacts of Structural Units for 4AT5
  • Structure Factors (318 Kb)
  • Retrieve 4AT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AT5 from S2C, [Save to disk]
  • Re-refined 4at5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AT5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AT5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4at5_A] [4at5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AT5: [TyrKc ] by SMART
  • Other resources with information on 4AT5
  • Community annotation for 4AT5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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