4ATK	Dna Binding Protein Dna	date	May 08, 2012
title	Mitf:E-Box Complex
authors	V.Pogenberg, V.Deineko, M.Wilmanns
compound		source
Molecule: Microphthalmia-Associated Transcription Factor Chain: A, B Fragment: Dna-Binding Domain, Residues 180-296 Synonym: Mitf Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Ril Expression_system_plasmid: Petm11
Molecule: 5'-D(Apgptpapgpcpapcpgptpgpcptpapc Chain: C, D Synonym: E-Box Sequence Engineered: Yes		Synthetic: Yes Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Other_details: Synthetic
symmetry	Space Group: C 1 2 1	R_factor 0.253 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 151.420 45.090 110.660 90.00 136.47 90.00
method	X-Ray Diffraction	resolution	2.95 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Restricted leucine zipper dimerization and specificity of DNA recognition of the melanocyte master regulator MITF., Pogenberg V, Ogmundsdottir MH, Bergsteinsdottir K, Schepsky A, Phung B, Deineko V, Milewski M, Steingrimsson E, Wilmanns M, Genes Dev. 2012 Dec 1;26(23):2647-58. doi: 10.1101/gad.198192.112. PMID:23207919

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (4atk.pdb1.gz) 68 Kb CSU: Contacts of Structural Units for 4ATK Structure Factors (89 Kb) Retrieve 4ATK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4ATK from S2C, [Save to disk] Re-refined 4atk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4ATK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4ATK

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4ATK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4atk_A] [4atk_D] [4atk] [4atk_B] [4atk_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4ATK: [HLH ] by SMART

Other resources with information on 4ATK

Community annotation for 4ATK at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---