4ATU Hydrolase date May 09, 2012
title Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin (2xr Into An 8a Cryo-Em Map Of Doublecortin-Stabilised Microtubu Reconstructed In Absence Of Kinesin
authors J.S.Liu, C.R.Schubert, X.Fu, F.J.Fourniol, J.K.Jaiswal, A.Houduss C.M.Stultz, C.A.Moores, C.A.Walsh
compound source
Molecule: Tubulin Beta-2b Chain
Chain: A, C, E, G
Ec: 3.6.5.6
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Brain

Molecule: Tubulin Alpha-1d Chain
Chain: B, D, F, H
Ec: 3.6.5.6

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Brain

Molecule: Neuronal Migration Protein Doublecortin
Chain: I
Fragment: Residues 2-360
Synonym: Doublin, Lissencephalin-X, Lis-X
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.30 Å
ligand GDP, GTP enzyme Hydrolase E.C.3.6.5.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


I


Primary referenceMolecular basis for specific regulation of neuronal Kinesin-3 motors by doublecortin family proteins., Liu JS, Schubert CR, Fu X, Fourniol FJ, Jaiswal JK, Houdusse A, Stultz CM, Moores CA, Walsh CA, Mol Cell. 2012 Sep 14;47(5):707-21. doi: 10.1016/j.molcel.2012.06.025. Epub 2012 , Aug 1. PMID:22857951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (551 Kb) [Save to disk]
  • Biological Unit Coordinates (4atu.pdb1.gz) 540 Kb
  • LPC: Ligand-Protein Contacts for 4ATU
  • CSU: Contacts of Structural Units for 4ATU
  • Retrieve 4ATU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ATU from S2C, [Save to disk]
  • View 4ATU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ATU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ATU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4atu_F] [4atu] [4atu_E] [4atu_A] [4atu_B] [4atu_H] [4atu_C] [4atu_G] [4atu_D] [4atu_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4ATU: [DCX] [Tubulin] [Tubulin_C ] by SMART
  • Other resources with information on 4ATU
  • Community annotation for 4ATU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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