4AVJ Cell Adhesion date May 26, 2012
title Structure Of The Fimh Lectin Domain In The Trigonal Space Group, In Complex With A Methanol Triazol Ethyl Phenyl Alpha-D-Mannoside At 2.1 A Resolution
authors A.Wellens, M.Lahmann, M.Touaibia, J.Vaucher, S.Oscarson, R.Roy, H. J.Bouckaert
compound source
Molecule: Fimh
Chain: A, B
Fragment: Lectin Domain, Residues 10-167
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 364106
Strain: Uti89
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C43
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet24a
symmetry Space Group: P 31 2 1
R_factor 0.1521 R_Free 0.2026
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.120 91.120 80.130 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand J73, NI, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Tyrosine Gate as a Potential Entropic Lever in the Receptor-Binding Site of the Bacterial Adhesin FimH., Wellens A, Lahmann M, Touaibia M, Vaucher J, Oscarson S, Roy R, Remaut H, Bouckaert J, Biochemistry. 2012 Jun 7. PMID:22657089
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (4avj.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (4avj.pdb2.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4AVJ
  • CSU: Contacts of Structural Units for 4AVJ
  • Structure Factors (345 Kb)
  • Retrieve 4AVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AVJ from S2C, [Save to disk]
  • Re-refined 4avj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AVJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AVJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4avj] [4avj_A] [4avj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AVJ
  • Community annotation for 4AVJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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