4AWL	Transcription Dna	date	Jun 04, 2012
title	The Nf-Y Transcription Factor Is Structurally And Functional Sequence Specific Histone
authors	M.Nardini, N.Gnesutta, G.Donati, R.Gatta, C.Forni, A.Fossati, C.Vo D.Moras, C.Romier, R.Mantovani, M.Bolognesi
compound		source
Molecule: Nuclear Transcription Factor Y Subunit Alpha Chain: A Fragment: Residues 233-303 Synonym: Ccaat Box Dna-Binding Protein Subunit A, Caat Box Binding Protein Subunit A, Nuclear Transcription Factor Y S Nf-Ya; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Transcription Factor Y Subunit Beta Chain: B Fragment: Residues 51-143 Synonym: Ccaat Box Dna-Binding Protein Subunit B, Caat Box Binding Protein Subunit B, Nuclear Transcription Factor Y S Nf-Yb; Engineered: Yes Other_details: Fragment Numbering 49-141 Is The Numbering D The Literature;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Transcription Factor Y Subunit Gamma Chain: C Fragment: Residues 27-120 Synonym: Caat Box Dna-Binding Protein Subunit C, Caat Box D Protein Subunit C, Nuclear Transcription Factor Y Subunit C Transactivator Hsm-12; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Hsp70 Promoter Fragment Chain: I Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Hsp70 Promoter Fragment Chain: J Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.700 62.560 139.680 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.08 Å
Gene Ontology	Chain Function Process Component A B C
Primary reference	Sequence-Specific Transcription Factor NF-Y Displays Histone-like DNA Binding and H2B-like Ubiquitination., Nardini M, Gnesutta N, Donati G, Gatta R, Forni C, Fossati A, Vonrhein C, Moras D, Romier C, Bolognesi M, Mantovani R, Cell. 2013 Jan 17;152(1-2):132-43. doi: 10.1016/j.cell.2012.11.047. PMID:23332751

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk] Biological Unit Coordinates (4awl.pdb1.gz) 117 Kb CSU: Contacts of Structural Units for 4AWL Structure Factors (126 Kb) Retrieve 4AWL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AWL from S2C, [Save to disk] Re-refined 4awl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AWL in 3D

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Visual 3D analysis of 4AWL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AWL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4awl] [4awl_A] [4awl_I] [4awl_B] [4awl_C] [4awl_J] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4AWL: [CBF ] by SMART

Other resources with information on 4AWL

Community annotation for 4AWL at PDBWiki (http://pdbwiki.org)

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