4AX8 Transferase date Jun 11, 2012
title Medium Resolution Structure Of The Bifunctional Kinase- Methyltransferase Wbdd
authors G.Hagelueken, H.Huang, J.H.Naismith
compound source
Molecule: Wbdd
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: O9a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
symmetry Space Group: I 2 3
R_factor 0.21244 R_Free 0.23282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
167.340 167.340 167.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand ADP, CL, SAM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallization, dehydration and experimental phasing of WbdD, a bifunctional kinase and methyltransferase from Escherichia coli O9a., Hagelueken G, Huang H, Harlos K, Clarke BR, Whitfield C, Naismith JH, Acta Crystallogr D Biol Crystallogr. 2012 Oct;68(Pt 10):1371-9. Epub 2012 Sep 18. PMID:22993091
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (4ax8.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 4AX8
  • CSU: Contacts of Structural Units for 4AX8
  • Structure Factors (239 Kb)
  • Retrieve 4AX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AX8 from S2C, [Save to disk]
  • Re-refined 4ax8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AX8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AX8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ax8_A] [4ax8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AX8: [STYKc ] by SMART
  • Other resources with information on 4AX8
  • Community annotation for 4AX8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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