4AXS Oxidoreductase date Jun 14, 2012
title Structure Of Carbamate Kinase From Mycoplasma Penetrans
authors P.Gallego, R.Planell, J.Benach, E.Querol, J.A.Perezpons, D.Revert
compound source
Molecule: Carbamate Kinase
Chain: A
Engineered: Yes
 Organism_scientific: Mycoplasma Penetrans
Organism_taxid: 28227
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 32 2 1
R_factor 0.2306 R_Free 0.2872
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.800 51.800 174.162 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma penetrans., Gallego P, Planell R, Benach J, Querol E, Perez-Pons JA, Reverter D, PLoS One. 2012;7(10):e47886. doi: 10.1371/journal.pone.0047886. Epub 2012 Oct 17. PMID:23082227
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (4axs.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 4AXS
  • CSU: Contacts of Structural Units for 4AXS
  • Structure Factors (143 Kb)
  • Retrieve 4AXS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AXS from S2C, [Save to disk]
  • Re-refined 4axs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4AXS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4AXS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AXS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4axs] [4axs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4AXS
  • Community annotation for 4AXS at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science