4AZ0 Hydrolase date Jun 22, 2012
title Crystal Structure Of Cathepsin A, Complexed With 8a.
authors S.Ruf, C.Buning, H.Schreuder, G.Horstick, W.Linz, T.Olpp, J.Perner K.Hiss, K.Kroll, A.Kannt, M.Kohlmann, D.Linz, T.Huebschle, H.Ruet K.Wirth, T.Schmidt, T.Sadowski
compound source
Molecule: Lysosomal Protective Protein 32 Kda Chain
Chain: A
Synonym: Carboxypeptidase C, Carboxypeptidase L, Cathepsin Protective Protein Cathepsin A, Ppca, Protective Protein F Beta-Galactosidase;
Ec: 3.4.16.5
Engineered: Yes
Other_details: Activated With Trypsin-Sepharose
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pvl1393

Molecule: Lysosomal Protective Protein 20 Kda Chain
Chain: B
Synonym: Carboxypeptidase C, Carboxypeptidase L, Cathepsin Protective Protein Cathepsin A, Ppca, Protective Protein F Beta-Galactosidase;
Ec: 3.4.16.5
Engineered: Yes
Other_details: Activated With Trypsin-Sepharose

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pvl1393
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.530 101.638 48.179 90.00 101.97 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand CD, NAG, S61 enzyme Hydrolase E.C.3.4.16.5 BRENDA
Primary referenceNovel beta-Amino Acid Derivatives as Inhibitors of Cathepsin A., Ruf S, Buning C, Schreuder H, Horstick G, Linz W, Olpp T, Pernerstorfer J, Hiss K, Kroll K, Kannt A, Kohlmann M, Linz D, Hubschle T, Rutten H, Wirth K, Schmidt T, Sadowski T, J Med Chem. 2012 Sep 13;55(17):7636-49. Epub 2012 Aug 16. PMID:22861813
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (4az0.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 4AZ0
  • CSU: Contacts of Structural Units for 4AZ0
  • Retrieve 4AZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AZ0 from S2C, [Save to disk]
  • View 4AZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AZ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AZ0, from MSDmotif at EBI
  • Fold representative 4az0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4az0_A] [4az0_B] [4az0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AZ0
  • Community annotation for 4AZ0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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