4AZY Hydrolase date Jun 27, 2012
title Design And Synthesis Of Bace1 Inhibitors With In Vivo Brain Of Beta-Amyloid Peptides (Compound 10)
authors B.M.Swahn, K.Kolmodin, S.Karlstrom, S.Von Berg, P.Soderman, J.Hol S.Berg, J.Lindstrom, M.Sundstrom, D.Turek, J.Kihlstrom, C.Slivo, L.Andersson, D.Pyring, L.Ohberg, A.Kers, K.Bogar, M.Bergh, L.L.Ol J.Janson, S.Eketjall, B.Georgievska, F.Jeppsson, J.Falting
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Residues 43-453
Synonym: Bace1, Aspartyl Protease 2, Asp2, Asp 2, Beta-Site Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Memapsin-2, Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet11a
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.540 76.390 104.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand 7F3, ACT, NA BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and Synthesis of beta-Site Amyloid Precursor Protein Cleaving Enzyme (BACE1) Inhibitors with in Vivo Brain Reduction of beta-Amyloid Peptides., Swahn BM, Kolmodin K, Karlstrom S, von Berg S, Soderman P, Holenz J, Berg S, Lindstrom J, Sundstrom M, Turek D, Kihlstrom J, Slivo C, Andersson L, Pyring D, Rotticci D, Ohberg L, Kers A, Bogar K, von Kieseritzky F, Bergh M, Olsson LL, Janson J, Eketjall S, Georgievska B, Jeppsson F, Falting J, J Med Chem. 2012 Sep 17. PMID:22924815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4azy.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4AZY
  • CSU: Contacts of Structural Units for 4AZY
  • Structure Factors (764 Kb)
  • Retrieve 4AZY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AZY from S2C, [Save to disk]
  • Re-refined 4azy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AZY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AZY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4azy] [4azy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AZY
  • Community annotation for 4AZY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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