4B05 Hydrolase date Jun 28, 2012
title Preclinical Characterization Of Azd3839, A Novel Clinical Ca Bace1 Inhibitor For The Treatment Of Alzheimer Disease
authors F.Jeppsson, S.Eketjall, J.Janson, S.Karlstrom, S.Gustavsson, L.L. A.C.Radesater, B.Ploeger, G.Cebers, K.Kolmodin, B.M.Swahn, S.Von T.Bueters, J.Falting
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Residues 43-453
Synonym: Aspartyl Protease 2, Asp2, Beta-Site Amyloid Precu Protein Cleaving Enzyme 1, Beta-Site App Cleaving Enzyme 1, 2, Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet11a
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.529 76.533 104.161 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 32D, ACT, NA BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of AZD3839, a potent and selective BACE1 clinical candidate for the treatment of Alzheimers Disease., Jeppsson F, Eketjall S, Janson J, Karlstrom S, Gustavsson S, Olsson LL, Radesater AC, Ploeger B, Cebers G, Kolmodin K, Swahn BM, von Berg S, Bueters T, Falting J, J Biol Chem. 2012 Oct 9. PMID:23048024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (4b05.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 4B05
  • CSU: Contacts of Structural Units for 4B05
  • Structure Factors (736 Kb)
  • Retrieve 4B05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B05 from S2C, [Save to disk]
  • Re-refined 4b05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B05
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B05, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b05] [4b05_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B05
  • Community annotation for 4B05 at PDBWiki (http://pdbwiki.org)
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