4B0P Hydrolase date Jul 04, 2012
title Crystal Structure Of Soman-Aged Human Butyrylcholinesterase With Methyl 2-(Pentafluorobenzyloxyimino)Pyridinium
authors M.Wandhammer, M.De Koning, M.Van Grol, D.Noort, M.Goeldner, F.Nac
compound source
Molecule: Cholinesterase
Chain: A
Fragment: Residues 29-557
Synonym: Butyrylcholinesterase, Acylcholine Acylhydrolase, Butyrylcholine Esterase, Choline Esterase II, Pseudocholine
Ec: 3.1.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho-K1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgs
symmetry Space Group: I 4 2 2
R_factor 0.164 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.230 154.230 133.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, CL, FUL, GLY, K, MF5, NA, NAG, SBG enzyme Hydrolase E.C.3.1.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA step toward the reactivation of aged cholinesterases - Crystal structure of ligands binding to aged human butyrylcholinesterase., Wandhammer M, de Koning M, van Grol M, Loiodice M, Saurel L, Noort D, Goeldner M, Nachon F, Chem Biol Interact. 2012 Aug 16. PMID:22922115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (4b0p.pdb1.gz) 361 Kb
  • LPC: Ligand-Protein Contacts for 4B0P
  • CSU: Contacts of Structural Units for 4B0P
  • Structure Factors (211 Kb)
  • Retrieve 4B0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B0P from S2C, [Save to disk]
  • Re-refined 4b0p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B0P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B0P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b0p] [4b0p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B0P
  • Community annotation for 4B0P at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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