4B3J Oxidoreductase Transferase date Jul 24, 2012
title Crystal Structure Of Mycobacterium Tuberculosis Fatty Acid Beta-Oxidation Complex With Coenzymea Bound At The Hydratase And Thiolase Active Sites
authors R.Venkatesan, R.K.Wierenga
compound source
Molecule: Fatty Acid Beta-Oxidation Complex Alpha-Chain Fad
Chain: A, B
Synonym: Enoylcoa Hydratase, Hydroxyacylcoa Dehydrogenase, Fatty Oxidation Protein Fadb;
Ec: 4.2.1.17, 1.1.1.35
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Plyss
Expression_system_plasmid: Pet Duet, Pacyc Duet

Molecule: Fatty Acid Beta-Oxidation Complex Beta-Chain Fada
Chain: C, D
Synonym: Thiolase, Putative Acyltransferase Rv0859
Ec: 2.3.1.9
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Plyss
Expression_system_plasmid: Pet Duet, Pacyc Duet
symmetry Space Group: C 1 2 1
R_factor 0.18133 R_Free 0.22140
crystal
cell
length a length b length c angle alpha angle beta angle gamma
248.300 135.250 118.580 90.00 110.64 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ADP, COA, GOL, SO4 enzyme Lyase E.C.4.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceStructure of mycobacterial beta-oxidation trifunctional enzyme reveals its altered assembly and putative substrate channeling pathway., Venkatesan R, Wierenga RK, ACS Chem Biol. 2013 Mar 15. PMID:23496842
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (714 Kb) [Save to disk]
  • Biological Unit Coordinates (4b3j.pdb1.gz) 704 Kb
  • LPC: Ligand-Protein Contacts for 4B3J
  • CSU: Contacts of Structural Units for 4B3J
  • Structure Factors (1932 Kb)
  • Retrieve 4B3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B3J from S2C, [Save to disk]
  • Re-refined 4b3j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4B3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4B3J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B3J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b3j_B] [4b3j_D] [4b3j_C] [4b3j_A] [4b3j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4B3J
  • Community annotation for 4B3J at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science