4B3Z Hydrolase date Jul 27, 2012
title Structure Of The Human Collapsin Response Mediator Protein-1 A Lung Cancer Suppressor
authors S.H.Liu, Y.H.Lin, S.F.Huang, Y.K.Niou, L.L.Huang, Y.J.Chen
compound source
Molecule: Dihydropyrimidinase-Related Protein 1
Chain: A, B, C, D
Synonym: Drp-1, Collapsin Response Mediator Protein 1, Crmp Unc-33-Like Phosphoprotein 3, Ulip-3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet Sumo
symmetry Space Group: P 1 21 1
R_factor 0.1739 R_Free 0.2271
length a length b length c angle alpha angle beta angle gamma
84.815 147.846 86.023 90.00 94.61 90.00
method X-Ray Diffractionresolution 3.05 Å
A, D, C, B

Primary referenceStructure of human collapsin response mediator protein 1: a possible role of its C-terminal tail., Liu SH, Huang SF, Hsu YL, Pan SH, Chen YJ, Lin YH, Acta Crystallogr F Struct Biol Commun. 2015 Aug 1;71(Pt 8):938-45. doi:, 10.1107/S2053230X15009243. Epub 2015 Jul 28. PMID:26249678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (4b3z.pdb1.gz) 294 Kb
  • CSU: Contacts of Structural Units for 4B3Z
  • Structure Factors (278 Kb)
  • Retrieve 4B3Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B3Z from S2C, [Save to disk]
  • Re-refined 4b3z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B3Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B3Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4B3Z, from MSDmotif at EBI
  • Fold representative 4b3z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b3z_A] [4b3z_C] [4b3z_B] [4b3z] [4b3z_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B3Z
  • Community annotation for 4B3Z at PDBWiki (http://pdbwiki.org)

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