4B7R Hydrolase date Aug 21, 2012
title H1n1 2009 Pandemic Influenza Virus: Resistance Of The I223r Neuraminidase Mutant Explained By Kinetic And Structural An
authors J.Liu, E.Van Der Vries, S.G.Vachieri, X.Xiong, P.J.Collins, P.A.W L.F.Haire, A.J.Hay, M.Schutten, A.D.M.E.Osterhaus, S.R.Martin, C.A.B.Boucher, J.J.Skehel, S.J.Gamblin
compound source
Molecule: Neuraminidase
Chain: A, B, C, D
Other_details: Oseltamivir Ligand Bound
 Organism_scientific: Influenza A Virus (Acalifornia07200
Organism_taxid: 641809
symmetry Space Group: P 21 21 21
R_factor 0.146 R_Free 0.173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.650 148.820 166.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, EPE, G39, NAG BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceH1N1 2009 Pandemic Influenza Virus: Resistance of the I223R Neuraminidase Mutant Explained by Kinetic and Structural Analysis., van der Vries E, Collins PJ, Vachieri SG, Xiong X, Liu J, Walker PA, Haire LF, Hay AJ, Schutten M, Osterhaus AD, Martin SR, Boucher CA, Skehel JJ, Gamblin SJ, PLoS Pathog. 2012 Sep;8(9):e1002914. doi: 10.1371/journal.ppat.1002914. Epub 2012, Sep 20. PMID:23028314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (509 Kb) [Save to disk]
  • Biological Unit Coordinates (4b7r.pdb1.gz) 497 Kb
  • LPC: Ligand-Protein Contacts for 4B7R
  • CSU: Contacts of Structural Units for 4B7R
  • Structure Factors (2236 Kb)
  • Retrieve 4B7R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B7R from S2C, [Save to disk]
  • Re-refined 4b7r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4B7R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4B7R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B7R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b7r_C] [4b7r_B] [4b7r_A] [4b7r_D] [4b7r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4B7R
  • Community annotation for 4B7R at PDBWiki (http://pdbwiki.org)
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