4B8T Transcription Rna date Aug 30, 2012
title Rna Binding Protein Solution Structure Of The Third Kh Domain Of Ksrp In Complex With The G-Rich Target Sequence.
authors G.Nicastro, M.F.Garcia-Mayoral, D.Hollingworth, G.Kelly, S.R.Mar P.Briata, R.Gherzi, A.Ramos
compound source
Molecule: Kh-Type Splicing Regulatory Protein
Chain: A
Fragment: Third Kh Domain, Residues 317-418
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-R(Apgpgpgpup)-3'
Chain: B
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNoncanonical G recognition mediates KSRP regulation of let-7 biogenesis., Nicastro G, Garcia-Mayoral MF, Hollingworth D, Kelly G, Martin SR, Briata P, Gherzi R, Ramos A, Nat Struct Mol Biol. 2012 Nov 11. doi: 10.1038/nsmb.2427. PMID:23142982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (573 Kb) [Save to disk]
  • Biological Unit Coordinates (4b8t.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 4B8T
  • Original NMR restraints for 4B8T from PDB
  • Retrieve 4B8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B8T from S2C, [Save to disk]
    • View 4B8T in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4B8T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B8T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b8t_A] [4b8t_B] [4b8t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B8T: [KH ] by SMART
    • Other resources with information on 4B8T
  • Community annotation for 4B8T at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
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