4B8W Oxidoreductase date Aug 31, 2012
title Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound Gdp, Tetragonal Crystal Form
authors M.Vollmar, T.Krojer, N.Shafqat, A.Rojkova, G.Bunkoczi, A.Pike, A.C E.Carpenter, W.W.Yue, K.Kavanagh, F.Von Delft, J.Weigelt, C.H.Ar C.Bountra, A.Edwards, U.Oppermann
compound source
Molecule: Gdp-L-Fucose Synthase
Chain: A, B
Synonym: Gdp-4-Keto-6-Deoxy-D-Mannose-3\,5-Epimerase- 4-Red Protein Fx, Red Cell Nadp(H)-Binding Protein, Short-Chain Dehydrogenasereductase Family 4e Member 1;
Ec: 1.1.1.271
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 42
R_factor 0.201 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.470 111.470 46.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand GDP, NAP enzyme Oxidoreductase E.C.1.1.1.271 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (4b8w.pdb1.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 4B8W
  • CSU: Contacts of Structural Units for 4B8W
  • Structure Factors (535 Kb)
  • Retrieve 4B8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B8W from S2C, [Save to disk]
  • Re-refined 4b8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B8W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B8W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b8w_B] [4b8w_A] [4b8w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B8W
  • Community annotation for 4B8W at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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