4B91 Signaling Protein date Aug 31, 2012
title Crystal Structure Of Truncated Human Crmp-5
authors R.Ponnusamy, B.Lohkamp
compound source
Molecule: Dihydropyrimidinase-Related Protein 5
Chain: A, B
Fragment: Residues 1-483
Synonym: Drp-5, Crmp3-Associated Molecule, Cram, Collapsin Mediator Protein 5, Crmp-5, Unc33-Like Phosphoprotein 6, U
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
Other_details: Mammalian Gene Collection (Mgc)
symmetry Space Group: P 41 21 2
R_factor 0.17008 R_Free 0.20181
length a length b length c angle alpha angle beta angle gamma
90.090 90.090 248.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
A, B

Primary referenceInsights into the oligomerization of CRMPs: Crystal structure of human collapsin response mediator protein 5., Ponnusamy R, Lohkamp B, J Neurochem. 2013 Feb 4. doi: 10.1111/jnc.12188. PMID:23373749
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (4b91.pdb1.gz) 322 Kb
  • CSU: Contacts of Structural Units for 4B91
  • Structure Factors (1340 Kb)
  • Retrieve 4B91 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B91 from S2C, [Save to disk]
  • Re-refined 4b91 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B91 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B91
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4B91, from MSDmotif at EBI
  • Fold representative 4b91 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b91] [4b91_A] [4b91_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B91
  • Community annotation for 4B91 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science