4B99 Transferase date Sep 03, 2012
title Crystal Structure Of Mapk7 (Erk5) With Inhibitor
authors J.M.Elkins, J.Wang, M.Vollmar, P.Mahajan, P.Savitsky, X.Deng, N.S. A.C.W.Pike, F.Von Delft, C.Bountra, C.Arrowsmith, A.Edwards, S.K
compound source
Molecule: Mitogen-Activated Protein Kinase 7
Chain: A
Fragment: Kinase Domain
Synonym: Map Kinase 7, Mapk 7, Big Map Kinase 1, Bmk-1, Ext Signal-Regulated Kinase 5, Erk-5;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: P 41 21 2
R_factor 0.222 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.150 95.150 119.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand R4L enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray Crystal Structure of ERK5 (MAPK7) in Complex with a Specific Inhibitor., Elkins JM, Wang J, Deng X, Pattison MJ, Arthur JS, Erazo T, Gomez N, Lizcano JM, Gray NS, Knapp S, J Med Chem. 2013 Jun 13;56(11):4413-21. doi: 10.1021/jm4000837. Epub 2013 May 17. PMID:23656407
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (4b99.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 4B99
  • CSU: Contacts of Structural Units for 4B99
  • Structure Factors (486 Kb)
  • Retrieve 4B99 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B99 from S2C, [Save to disk]
  • Re-refined 4b99 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B99 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B99
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B99, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b99] [4b99_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B99: [S_TKc ] by SMART
  • Other resources with information on 4B99
  • Community annotation for 4B99 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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