OCA Atlas for 4B9K

4B9K

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ACT, CAS, TG0

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, G, J, A
H, B, K, E

Primary reference

Small-Molecule Inhibitors of the Interaction between the E3 Ligase VHL and HIF1alpha, Buckley DL, Gustafson JL, Van Molle I, Roth AG, Tae HS, Gareiss PC, Jorgensen WL, Ciulli A, Crews CM, Angew Chem Int Ed Engl. 2012 Oct 12. doi: 10.1002/anie.201206231. PMID:23065727

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk]

Biological Unit Coordinates (4b9k.pdb1.gz) 115 Kb

Biological Unit Coordinates (4b9k.pdb2.gz) 116 Kb

Biological Unit Coordinates (4b9k.pdb3.gz) 118 Kb

Biological Unit Coordinates (4b9k.pdb4.gz) 118 Kb

LPC: Ligand-Protein Contacts for 4B9K

CSU: Contacts of Structural Units for 4B9K

Structure Factors (1824 Kb)

Retrieve 4B9K in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4B9K from S2C, [Save to disk]

Re-refined 4b9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4B9K in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4b9k_G] [4b9k_H] [4b9k_I] [4b9k_J] [4b9k_K] [4b9k_L] [4b9k] [4b9k_A] [4b9k_B] [4b9k_C] [4b9k_D] [4b9k_E] [4b9k_F]

SWISS-PROT database:

Domains found in 4B9K: [Skp1] [UBQ ] by SMART

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