4BBL Nuclear Protein date Sep 26, 2012
title Cryo-Electron Microscopy Reconstruction Of The Helical Part Influenza A Virus Ribonucleoprotein Isolated From Virions.
authors R.Arranz, R.Coloma, F.J.Chichon, J.J.Conesa, J.L.Carrascosa, J.M.Valpuesta, J.Ortin, J.Martin-Benito
compound source
Molecule: Nucleoprotein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X;
Fragment: Residues 8-498
Synonym: Nucleocapsid Protein, Protein N
Engineered: Yes
Organism_scientific: Influenza A Virus
Organism_taxid: 11320
Strain: Awsn33 (H1n1)
Expression_system: Canis Lupus Familiaris
Expression_system_common: Dog
Expression_system_taxid: 9615
Expression_system_cell_line: Mdck
Other_details: Cryoem Map From Awsn33 Strand (H1n1). Dock 2iqh.;

Molecule: Rna
Chain: Y, Z
Engineered: Yes

Organism_scientific: Influenza A Virus
Organism_taxid: 11320
Strain: Awsn33 (H1n1)
Expression_system: Canis Lupus Familiaris
Expression_system_common: Dog
Expression_system_taxid: 9615
Expression_system_cell_line: Mdck
Other_details: Cryoem Map From Awsn33 Strand (H1n1). Dock 2iqh.
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 18.00 Å
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceThe structure of native influenza virion ribonucleoproteins., Arranz R, Coloma R, Chichon FJ, Conesa JJ, Carrascosa JL, Valpuesta JM, Ortin J, Martin-Benito J, Science. 2012 Dec 21;338(6114):1634-7. doi: 10.1126/science.1228172. Epub 2012, Nov 22. PMID:23180776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1597 Kb) [Save to disk]
  • Biological Unit Coordinates (4bbl.pdb1.gz) 1583 Kb
  • CSU: Contacts of Structural Units for 4BBL
  • Retrieve 4BBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BBL from S2C, [Save to disk]
  • View 4BBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BBL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bbl_C] [4bbl_I] [4bbl_P] [4bbl_W] [4bbl_H] [4bbl_X] [4bbl_O] [4bbl_V] [4bbl_T] [4bbl_E] [4bbl_Z] [4bbl_L] [4bbl_A] [4bbl_N] [4bbl_F] [4bbl_G] [4bbl_R] [4bbl_J] [4bbl_Y] [4bbl_K] [4bbl_M] [4bbl_B] [4bbl_S] [4bbl] [4bbl_Q] [4bbl_D] [4bbl_U]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BBL
  • Community annotation for 4BBL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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